PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05355.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 411aa    MW: 45143.3 Da    PI: 9.2112
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05355.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-186683599
                   EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +   +++ l+v+++r+
  Jcr4S05355.20  6 TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLR--ADNGDLCVGIRRA 68
                   78899********************************************3..478888****996 PP
2Auxin_resp116.32.6e-38137220183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Jcr4S05355.20 137 AASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 220
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.169169IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-23276IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0017369IPR003340B3 DNA binding domain
SuperFamilySSF1019365.23E-18469IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-15567No hitNo description
PfamPF023621.4E-16568IPR003340B3 DNA binding domain
PfamPF065071.0E-33137220IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
DPPVQTILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRADNGD  60
LCVGIRRAKR GIGGSPESSW NPAGGNCVMP YGGFTGFLRE EDNKIMRNGT SGNGNGSSAN  120
GSSISRGKVK SEAVIEAASL AANGKPFEVV YYPRASTPEF CVKASLVKAA LQIRWCSGMR  180
FKMAFETEDS SRISWFMGTI SSVQVADPIR WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV  240
ELVSNMPTIH LSPFSPPRKK LRLPQHPDFP LDGQFPIPTF SGNLLGPSSP FGCLPDNTTP  300
AGMQGARHAH YGLSLSDLHL NKLHTGLIPA GFPPLLDHTA THTRTSNGPI IQKPSMSESV  360
SCVLTMSHAS TQPSKKRNDA KTPHLFIQYL DPSVDDIPFD DILNWDISSA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-411241158353Auxin response factor 1
4ldy_B5e-411241158353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082361.10.0auxin response factor 18
SwissprotQ653H71e-167ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067JYZ20.0A0A067JYZ2_JATCU; Auxin response factor
STRINGcassava4.1_002684m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-147auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]