PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05372.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 122aa    MW: 13322 Da    PI: 4.6844
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05372.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.15.8e-144895147
         DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllk 47
                   +CaaCk+l+++C+++C +a yfp++  p+kf +v  lFG + ++ +l+
  Jcr4S05372.20 48 PCAACKILGQRCTDKCYIASYFPSTTePHKFTVVGSLFGDDDIVDYLQ 95
                   7***********************7659**************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.62147122IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-124895IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSPSPSSNSP CPSSQSLNSP FQPSFPFPPS LTSSSHVAGP PSATVIGPCA ACKILGQRCT  60
DKCYIASYFP STTEPHKFTV VGSLFGDDDI VDYLQLEFKL DDYRVELEFD YFCTNRVRAL  120
TP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535214.11e-61uncharacterized protein LOC105635408 isoform X2
TrEMBLA0A067LNX33e-60A0A067LNX3_JATCU; Uncharacterized protein
STRINGPOPTR_0008s04350.19e-15(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.19e-15LOB domain-containing protein 11