PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05387.10

Common Name

JCGZ_06687

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 127aa MW: 13729.3 Da PI: 6.2071

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05387.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.3	5.9e-15	80	127	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa.eqpkkfanvhklFGasnvlkllk 47 +CaaC +l r+C+++C la yfp+ +p++f +v lFG snv++ll+ Jcr4S05387.10 80 PCAACTILHRRCTDKCYLASYFPQgVEPHNFTVVDSLFGLSNVVELLQ 127 7*********************5559**************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.424	79	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-13	80	127	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MGNNPFLFPS TVSYSQPSLP SSPSFNSYIP SPSPSLSFDS YSPSSPSLNS PFQFYQSLPS 60 PPSQISSNHF GPRSADAVGP CAACTILHRR CTDKCYLASY FPQGVEPHNF TVVDSLFGLS 120 NVVELLQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535449.1	4e-82	transcriptional corepressor LEUNIG
TrEMBL	A0A067LCH1	8e-80	A0A067LCH1_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	7e-14	LOB domain-containing protein 11

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]