PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05502.10
Common NameJCGZ_19646, LOC105643836
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family DBB
Protein Properties Length: 158aa    MW: 17618 Da    PI: 5.5528
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05502.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.2e-08433534
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                    C+ +e+  ++lfC  ++  lC++C ++ H
  Jcr4S05502.10  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                   7**************************998 PP
2zf-B_box21.93.6e-075293237
       zf-B_box  2 eerkCpeHeeke..lqlfCedCqqllCedClleeHkg....H 37
                   + ++C+ +e+ +  + ++Ce +++ lC +C +  H g    H
  Jcr4S05502.10 52 DVPRCDICENAPgiAFFYCEIDGSSLCLQCDMIVHVGgkrtH 93
                   5789******999999****************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003365.0E-9147IPR000315B-box-type zinc finger
CDDcd000212.61E-6345No hitNo description
PfamPF006432.8E-6341IPR000315B-box-type zinc finger
SMARTSM003361.2E-65198IPR000315B-box-type zinc finger
CDDcd000211.52E-45486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPGIAFFYC EIDGSSLCLQ CDMIVHVGGK RTHGRYLLFR QRVEFPGDKP GHLDELGQQQ  120
LDQNDTRRDQ NQPPILTLRE NKQNHGASSI TMMENNID
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538783.11e-112B-box zinc finger protein 19
SwissprotQ9SJU59e-68BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A067JUK01e-110A0A067JUK0_JATCU; Uncharacterized protein
STRINGcassava4.1_016111m1e-100(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.14e-70DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]