PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05523.40
Common NameJCGZ_01225, LOC105648750
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family G2-like
Protein Properties Length: 367aa    MW: 41976.8 Da    PI: 8.1003
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05523.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.5e-3280133255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Jcr4S05523.40  80 PRLRWTPDLHLCFVHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 133
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.17676136IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-3076134IPR009057Homeodomain-like
SuperFamilySSF466891.79E-1478134IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-2380135IPR006447Myb domain, plants
PfamPF002493.9E-981132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MKGIVSDCTL EGSDKLSFSH KKSHEDDDSD EEVNKKNCCK QRNEEIISTS NSSVDEESEK  60
KEKDSATTRS VRQYIRSKMP RLRWTPDLHL CFVHAVERLG GQERATPKLV LQLMNIKGLS  120
IAHVKSHLQM YRSKKIDDAN QGQRLLFEGD DHNIFNLSQL SMLQGFNQKP NFTNLRYRDV  180
SWRGHEHHQI YNPYMGVGGN TLTRSKQGFS DSAVDNRLIN HHFPSLNGQN FISKIHQSSN  240
ELKSFHRPSS LESSNLISKL RERGKDQDQE REQEDCFKND TLPIQGMENN LLKRKNNFDL  300
NCKLDLNLSL KVARKENNSM EGDEVDSSLS LSLSSSSSSK LSCGFKEEQD ESNRKVARRA  360
STLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090632.10.0two-component response regulator ARR2
TrEMBLA0A067LJD00.0A0A067LJD0_JATCU; Uncharacterized protein
STRINGcassava4.1_023609m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.15e-50G2-like family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]