PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05534.20

Common Name

JCGZ_06908, LOC105634596

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 219aa MW: 24166.6 Da PI: 8.4094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05534.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6e-12	9	34	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t CkyG +CkF+H++ Jcr4S05534.20 9 REPDCPYFLKTKRCKYGLNCKFNHPK 34 789*********************96 PP
2	zf-CCCH	38.2	2.3e-12	58	82	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G++CkF+H++ Jcr4S05534.20 58 EPTCAFYMKTGKCKFGATCKFHHPK 82 689********************96 PP
3	zf-CCCH	39.4	9.9e-13	137	160	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ Jcr4S05534.20 137 EADCPFYLKTGSCKYGATCRYNHP 160 789********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.319	7	35	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.0E-6	7	34	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-9	9	34	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	9	37	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-5	13	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.094	55	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-5	55	82	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	58	83	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.5E-10	58	82	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-5	61	81	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.802	134	162	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-6	134	161	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-10	137	160	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-6	137	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	140	159	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MESLPERPRE PDCPYFLKTK RCKYGLNCKF NHPKDKLALF QGGSEDNDGF ALPERPSEPT 60 CAFYMKTGKC KFGATCKFHH PKDIQMQFGQ ETNNTVQIGS TVTMEGTTGD FNVVKASISL 120 TPALGHNSKG LPIRLGEADC PFYLKTGSCK YGATCRYNHP DRNAINPPAA AISHPIVANP 180 AANLNIGVIN PAASLYQTID PRLAQPMVWV NICRFQQEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269\|PubMed:11595801, ECO:0000269\|PubMed:12530963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072859.1	1e-154	zinc finger CCCH domain-containing protein 37 isoform X3
Swissprot	Q941Q3	7e-76	C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A067KR25	1e-150	A0A067KR25_JATCU; Uncharacterized protein
STRING	XP_002528658.1	1e-106	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7558	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-78	floral homeotic protein (HUA1)

Link Out ? help Back to Top
Entrez Gene	105634596

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]