PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05581.10
Common NameJCGZ_02456, LOC105629779
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 287aa    MW: 33373 Da    PI: 8.6108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05581.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-061236123
                   EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                   y+C   dC+ s++rk++L+rH+ +H
  Jcr4S05581.10 12 YVCLvdDCHASYRRKDHLTRHLLKH 36
                   899999*****************99 PP
2zf-C2H215.55.1e-054166123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                   +kCp  +C++ F  + n krH +  H
  Jcr4S05581.10 41 FKCPieNCDRQFVFQGNVKRHVNEfH 66
                   89*******************99888 PP
3zf-C2H219.62.5e-0680104123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    y+C+   Cgk+F+  s L++H  +H
  Jcr4S05581.10  80 YVCQesGCGKVFRYLSKLQKHEDSH 104
                    99*******************9888 PP
4zf-C2H214.40.00011172196223
                    EET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                    kC+   C   Fs+k nL++H +  H
  Jcr4S05581.10 172 KCHfeGCRNAFSNKTNLNQHVKAaH 196
                    7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-6938No hitNo description
Gene3DG3DSA:3.30.160.605.0E-9938IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0191236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0781241IPR007087Zinc finger, C2H2
PROSITE patternPS0002801436IPR007087Zinc finger, C2H2
SuperFamilySSF576672.55E-64067No hitNo description
SMARTSM003550.144166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-54169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1774171IPR007087Zinc finger, C2H2
PROSITE patternPS0002804366IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-675106No hitNo description
Gene3DG3DSA:3.30.160.605.2E-876104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001780104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88780109IPR007087Zinc finger, C2H2
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
SMARTSM003555.5112137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114137IPR007087Zinc finger, C2H2
SMARTSM0035514140161IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.72E-7151208No hitNo description
Gene3DG3DSA:3.30.160.603.0E-6151193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015171196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743171201IPR007087Zinc finger, C2H2
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
SMARTSM003556.4202228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRFEGFFIQR PYVCLVDDCH ASYRRKDHLT RHLLKHEGRL FKCPIENCDR QFVFQGNVKR  60
HVNEFHSQKS PSTDVGEKKY VCQESGCGKV FRYLSKLQKH EDSHVKLDSV EAICAEPGCM  120
KHFSDVQCLQ AHVQSCHTYM TCEICGTKQL KKNLKRHLRT HESGGGSMER IKCHFEGCRN  180
AFSNKTNLNQ HVKAAHLEVR RFTCGVPGCD MRFAYKHVRD RHEKSACHVY TAGDFEDFDD  240
QFRSRPRGGR KRECPTVDIL LRKRVLPPSD LDECCSWFQS IGSQEQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-11919419183Aart
2i13_B2e-11919419183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066810.10.0transcription factor IIIA
SwissprotQ84MZ41e-106TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A067LE810.0A0A067LE81_JATCU; Uncharacterized protein
STRINGcassava4.1_010279m1e-160(Manihot esculenta)
STRINGXP_002533583.11e-160(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-109transcription factor IIIA
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]