PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05615.20
Common NameJCGZ_14750, LOC105639060
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 338aa    MW: 38540.9 Da    PI: 8.5402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05615.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05177196120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C++C+k+F+r  n++ H+
  Jcr4S05615.20 177 FECSICSKTFNRYNNMQMHM 196
                    89*****************9 PP
2zf-C2H216.13.3e-05261283123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  k + ++H +++
  Jcr4S05615.20 261 FMCRKCGKTFAVKGDWRTHEKNC 283
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-5168200No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.658177204IPR007087Zinc finger, C2H2
PfamPF139123.0E-5177196IPR007087Zinc finger, C2H2
SMARTSM003550.096177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SMARTSM00355190224256IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.8E-6247281No hitNo description
Gene3DG3DSA:3.30.160.608.0E-6257281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704261281IPR007087Zinc finger, C2H2
SMARTSM0035535261281IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGLWNYHVQD TNPSSNFIEW LKPSSSSSSL TSSSSSSSCS ITQQVHLTNP TAMNILKLPL  60
LYPQQQEIFV KETIQCLPLL NTLIEKKAMK EEDMDIQENI INREKISKDN LDDDKVTVAL  120
HIGLPNSGSS TEKVETKVNF DEFKEPIKKS FHGGPFNSET RFWIPTPAQI LVGPMQFECS  180
ICSKTFNRYN NMQMHMWGHG SEFRRGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK  240
PLKDFRTLQT HYKRKHGAKP FMCRKCGKTF AVKGDWRTHE KNCGKLWYCI CGSDFKHKRS  300
LKDHIRSFGK GHSPHPSLEG FDDDKECITG SEEDEFAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078386.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-128ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A067K8X30.0A0A067K8X3_JATCU; Uncharacterized protein
STRINGXP_002523788.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-127WIP domain protein 3
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]