PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05652.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 115aa MW: 12986 Da PI: 9.0086

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05652.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131	5e-41	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C+ dC+++pyfp+++p++fa+vhk++Gasnv k+l+++p++ r a++sl+yeA+ r++dPvyG+vg+i+ l+qq++ ++++la+ Jcr4S05652.50 5 RCAACKYLRRRCSLDCIFSPYFPSNNPQRFAYVHKIYGASNVAKILQQVPDHLRASAAESLYYEAKYRIEDPVYGCVGIISLLHQQIHIAENQLAK 100 6*********************************************************************************************** PP DUF260 97 lkee 100 +k+e Jcr4S05652.50 101 TKAE 104 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.594	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSCGRCAACK YLRRRCSLDC IFSPYFPSNN PQRFAYVHKI YGASNVAKIL QQVPDHLRAS 60 AAESLYYEAK YRIEDPVYGC VGIISLLHQQ IHIAENQLAK TKAEIAVLAS QNFTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-38	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-38	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087781.1	3e-81	LOB domain-containing protein 24-like
Swissprot	P59468	8e-52	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	B9SXJ8	1e-61	B9SXJ8_RICCO; LOB domain-containing protein, putative
STRING	XP_002530717.1	2e-62	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-54	LOB domain-containing protein 24