PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05691.60
Common NameJCGZ_12894
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 261aa    MW: 30376.4 Da    PI: 9.7605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05691.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.9e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+++G g+W+++ar  g++R +k+c++rw +yl
    Jcr4S05691.60 22 KGPWTAEEDRLLMEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
    Jcr4S05691.60  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8281773IPR017930Myb domain
SuperFamilySSF466891.95E-3019116IPR009057Homeodomain-like
SMARTSM007175.5E-162171IPR001005SANT/Myb domain
PfamPF002491.9E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-242376IPR009057Homeodomain-like
CDDcd001673.29E-112469No hitNo description
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129419.3574124IPR017930Myb domain
PfamPF002491.1E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2477123IPR009057Homeodomain-like
CDDcd001679.10E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSWGVMGGHL GWGGLIEEGW RKGPWTAEED RLLMEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLAPEN SEKARTRFLK RQQFQQQQQQ QQQLQQQQQL QLNQLDMKKI MSLLDETENN  180
NSKLAYLPQI RQEMANNLLY PNTTEEHGVL YSMFNAANNG SVPEASNEDI LWDGLWNLDD  240
VHVNFGVTSK AGMHNLVAPF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261212417128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346490.0KM034649.1 Jatropha curcas clone JcMYB029 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077638.10.0myb-related protein 340
TrEMBLA0A067KM400.0A0A067KM40_JATCU; MYB family protein
STRINGcassava4.1_013947m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-83myb domain protein 79
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]