PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05700.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 311aa    MW: 34147.4 Da    PI: 5.6359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05700.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102372771055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Jcr4S05700.10 237 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 277
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14227294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12232288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-12236281No hitNo description
PfamPF000101.1E-7237277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEPVGVTMEG EWSSLSGIYT NEEADFLAQM LGINACFDSC SFWSSHDHSG THNNSSDFSN  60
GSNFCNFSQG NSSSIYSGCS NFVFPTSSQE SYHLSESHLN NNSSMSMDFC TGDVTNTASY  120
LVEGYDCSNQ EIKDKSNSLS EVPRKRSQSA GDTQKSKRNA RFKKSKKLSN NDQESNAGLS  180
GPASSSCWSE DDSNASHELN GGVISSMSSK GTEAANLNGK TRASRGSATD PQSLYARKRR  240
ERINERLRIL QNLVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSEDLWM YAPIAYNGMD  300
IGLDLKLTTP R
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093112.10.0transcription factor bHLH85
SwissprotQ84WK01e-68BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A2C9V4L61e-146A0A2C9V4L6_MANES; Uncharacterized protein
STRINGcassava4.1_026804m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.18e-49ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]