PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05725.10
Common NameJCGZ_03451, LOC105632316
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 167aa    MW: 18670.9 Da    PI: 9.4016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05725.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-202575255
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+++AeIrdp   + k +r +lg+f ta eAaka+++a+ k++g
  Jcr4S05725.10 25 HYRGVRQRP-WGKYAAEIRDP---NrKGTRLWLGTFETAIEAAKAYDQAAFKFRG 75
                   7********.**********9...6566************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-332484IPR001471AP2/ERF domain
SMARTSM003803.7E-362589IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-232585IPR016177DNA-binding domain
PROSITE profilePS5103224.3292583IPR001471AP2/ERF domain
PfamPF008474.9E-142575IPR001471AP2/ERF domain
CDDcd000184.35E-292583No hitNo description
PRINTSPR003678.2E-142637IPR001471AP2/ERF domain
PRINTSPR003678.2E-146585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
IQFAEPNQQS VQADSGASAV EEKRHYRGVR QRPWGKYAAE IRDPNRKGTR LWLGTFETAI  60
EAAKAYDQAA FKFRGSKAIL NFPLEAGKWN TRASEGNERK RTRESEIVEE EAKKVVKREE  120
PQGDEALTPS SWTAIMDGGD LKGIFNVPPL SPFSPHPPLG YSQLIVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-292484464ATERF1
3gcc_A5e-292484464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070058.11e-120ethylene-responsive transcription factor 5
SwissprotQ404785e-61ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A067L5Z51e-118A0A067L5Z5_JATCU; Uncharacterized protein
STRINGcassava4.1_012714m6e-74(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-45ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]