PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06148.40
Common NameJCGZ_20784, LOC105645985
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family YABBY
Protein Properties Length: 126aa    MW: 13942.9 Da    PI: 7.8484
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06148.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY93.84.2e-2910103292
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesa 92 
                    d+ s seq+CyvqCn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      a + hl++s+  +   ll+e  +++ n+  n+++ ++ 
  Jcr4S06148.40  10 DHLSPSEQLCYVQCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALILPSANQFHLGHSFYSPshnLLDEIPNQTPNFLINQTNVNNF 103
                    68899*****************************************999999999999999***998774556666666666666666655543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-271473IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MSSSSSLSVD HLSPSEQLCY VQCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRA  60
LILPSANQFH LGHSFYSPSH NLLDEIPNQT PNFLINQTNV NNFSVPSRGV THDELPRPPV  120
INRRKI
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087132.11e-84axial regulator YABBY 1
SwissprotQ01JG22e-30YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF02e-30YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A067JS143e-83A0A067JS14_JATCU; Uncharacterized protein
STRINGcassava4.1_016118m8e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-26YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]