PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06157.40
Common NameJCGZ_19646, LOC105643836
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family DBB
Protein Properties Length: 212aa    MW: 23456.4 Da    PI: 6.0793
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06157.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                    C+ +e+  ++lfC  ++  lC++C ++ H
  Jcr4S06157.40  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                   7**************************998 PP
2zf-B_box21.26.1e-075293237
       zf-B_box  2 eerkCpeHeeke..lqlfCedCqqllCedClleeHkg....H 37
                   + ++C+ +e+ +  + ++Ce +++ lC +C +  H g    H
  Jcr4S06157.40 52 DVPRCDICENAPgiAFFYCEIDGSSLCLQCDMIVHVGgkrtH 93
                   5789******999999****************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003365.0E-9147IPR000315B-box-type zinc finger
CDDcd000215.87E-7345No hitNo description
PfamPF006434.6E-6334IPR000315B-box-type zinc finger
SMARTSM003361.2E-65198IPR000315B-box-type zinc finger
CDDcd000214.16E-55486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPGIAFFYC EIDGSSLCLQ CDMIVHVGGK RTHGRYLLFR QRVEFPGDKP GHLDELGQQQ  120
LDQNDTRRDQ NQPPILTLRE NKQNHGASSI TMMENNIDGD GKIDNKLIDL NARPQRVHGQ  180
NSTNQAIDVM SGNNHESASV VPVGSFKREP EK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538783.11e-154B-box zinc finger protein 19
SwissprotC0SVM51e-88BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A067JUK01e-152A0A067JUK0_JATCU; Uncharacterized protein
STRINGcassava4.1_016111m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-91DBB family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]