PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06283.20
Common NameJCGZ_18434
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 177aa    MW: 19405.2 Da    PI: 9.1386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06283.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00153456123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  Jcr4S06283.20 34 FECKTCNRQFPSFQALGGHRASH 56
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.62E-932108No hitNo description
PfamPF139122.9E-133358IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8273461IPR007087Zinc finger, C2H2
SMARTSM003550.163456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PfamPF139126.2E-1085110IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91286108IPR007087Zinc finger, C2H2
SMARTSM003550.586108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MANCLMLLSQ GKETRFPSFE AMKDTGLNSP GRVFECKTCN RQFPSFQALG GHRASHKKPR  60
LMGGDGSLEN QTSSLSSSSP VKPKTHECSI CGLEFAIGQA LGGHMRRHRA ALSNNNHNNG  120
DDSAEEKVMV PPPILKKSNS KRVLCLDLNL TPYENDLEFF RLVGKEAPMV LTVSSRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537954.11e-129zinc finger protein ZAT12-like
TrEMBLA0A067KDD31e-128A0A067KDD3_JATCU; Uncharacterized protein
STRINGXP_002528469.18e-78(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-37C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]