PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06306.20

Common Name

JCGZ_24760, LOC105631451

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 548aa MW: 59925.6 Da PI: 8.9688

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06306.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Jcr4S06306.20 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12.6	0.00041	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Jcr4S06306.20 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.15E-6	85	108	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	85	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	86	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	127	157	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-4	150	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.15E-6	157	182	No hit	No description
SMART	SM00355	140	162	182	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MMKGNNLLIH HHQQQQQQEE NMSNLTSASG EASVSSGNRN DSQQYFAPPP PQSQPPKKKR 60 NLPGNPDPDA EVMALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK 120 EVRKKVYVCP ETSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITAPPPNPVV LLNNSSCSTP 240 HNNNNSNINL QIPQFNAHQD HLHAFSLKKE QPSFTTTPLR PDLPPWLAAG PPPRHPIDHS 300 TSSSSILTHH QDLSQNPNPN SLGPTLPHFQ APLSPHMSAT ALLQKAAQMG ATMSSKTTGL 360 VRPHHHHHHN QQQQEQAHVS VDSSNNNANA TGFGLNLSSR DELASGGPFV HSHHHGLISF 420 GNKAATFGLP SGSTTAGTTN GALLQEMMNS LSSSPGFQET TASFEDAFAS GVLNSKKDAN 480 FHDSLPKATT NDNGGGGGGV GGEGLTRDFL GLRAFSHSDI LSMAGFGNCM NTPPSHEQHN 540 QSQKTWQG

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MMKGNNLLIH HHQQQQQQEE NMSNLTSASG EASVSSGNRN DSQQYFAPPP PQSQPPKKKR  60
NLPGNPDPDA EVMALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK  120
EVRKKVYVCP ETSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITAPPPNPVV LLNNSSCSTP  240
HNNNNSNINL QIPQFNAHQD HLHAFSLKKE QPSFTTTPLR PDLPPWLAAG PPPRHPIDHS  300
TSSSSILTHH QDLSQNPNPN SLGPTLPHFQ APLSPHMSAT ALLQKAAQMG ATMSSKTTGL  360
VRPHHHHHHN QQQQEQAHVS VDSSNNNANA TGFGLNLSSR DELASGGPFV HSHHHGLISF  420
GNKAATFGLP SGSTTAGTTN GALLQEMMNS LSSSPGFQET TASFEDAFAS GVLNSKKDAN  480
FHDSLPKATT NDNGGGGGGV GGEGLTRDFL GLRAFSHSDI LSMAGFGNCM NTPPSHEQHN  540
QSQKTWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	158	219	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-34	158	219	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	124	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-126	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068969.1	0.0	protein indeterminate-domain 11
Swissprot	Q9LRW7	1e-135	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A067KX53	0.0	A0A067KX53_JATCU; Uncharacterized protein
STRING	cassava4.1_004983m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-115	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Entrez Gene	105631451

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]