PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06344.30
Common NameJCGZ_27169, LOC105647219
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24364 Da    PI: 7.2932
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06344.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-193385456
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++f++eq++ Le+ Fe++ ++  +++ +LA +lgL+ rqV +WFqNrRa++k
  Jcr4S06344.30 33 KRRFSDEQIRLLESIFESETKLEPRKKLQLAGELGLQPRQVAIWFQNRRARWK 85
                   679*************************************************9 PP
2HD-ZIP_I/II122.12.7e-3932123293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +krr+s+eq++lLE+ Fe+e+kLep++K +la eLglqprqva+WFqnrRAR+k+kq+E++y+ L+++yd+l++  e+L++e+++L  +l++
  Jcr4S06344.30  32 NKRRFSDEQIRLLESIFESETKLEPRKKLQLAGELGLQPRQVAIWFQNRRARWKSKQIEQEYKNLRANYDKLASCFESLKNEKQSLLIQLQK 123
                    79************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-192188IPR009057Homeodomain-like
SMARTSM003893.3E-172491IPR001356Homeobox domain
PROSITE profilePS5007117.3462787IPR001356Homeobox domain
PfamPF000464.8E-173285IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-193394IPR009057Homeodomain-like
CDDcd000861.12E-143488No hitNo description
PRINTSPR000311.1E-55867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000311.1E-56783IPR000047Helix-turn-helix motif
PfamPF021835.7E-1487128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSNQIEGRGY SLEEPDASSE TTKKKKKHTT NNKRRFSDEQ IRLLESIFES ETKLEPRKKL  60
QLAGELGLQP RQVAIWFQNR RARWKSKQIE QEYKNLRANY DKLASCFESL KNEKQSLLIQ  120
LQKLNQLLGQ PCEGDRTCKT AIDSDNGNIN SDNEAQQGLD NRVFMCSEMN NSREEYTDGS  180
LASPDQWYSF HSASQFDLSS SSSQWFNFWA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088620.11e-155homeobox-leucine zipper protein ATHB-12
SwissprotP468972e-47ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A067JIR41e-153A0A067JIR4_JATCU; Uncharacterized protein
STRINGXP_002515621.11e-110(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]