PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06402.10
Common NameJCGZ_21805, LOC105649875
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 200aa    MW: 22764.5 Da    PI: 8.3593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06402.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-052547123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  Jcr4S06402.10 25 YTCSFCKRQFNSAQALGGHMNVH 47
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-42250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.48E-72252No hitNo description
PfamPF139129.8E-72548IPR007087Zinc finger, C2H2
SMARTSM003550.00312547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2612552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MERTCLGSED DNSSSSGFLW PQRNYTCSFC KRQFNSAQAL GGHMNVHRRD RAMLIQLPSW  60
VFDCPNPNPN FPSSASLSSS TATSSPSHNN DNNNKKMLPY PYYYNNSSPF GTTSFTLPSN  120
NQQKKSNLEF PQSEDLAKKR MKKSMRAAVV EVEEFNKSNL SRKYERIEVL KNNEVISLEL  180
EIGCKDPKEV LDLELRLGCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-112047229superman protein
2l1o_A2e-112047229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020541062.11e-148zinc finger protein 11
TrEMBLA0A067JP761e-146A0A067JP76_JATCU; Uncharacterized protein
STRINGcassava4.1_030158m8e-70(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-22zinc finger protein 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]