PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06435.10
Common NameLOC105638368
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 210aa    MW: 24220.4 Da    PI: 6.2561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06435.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-081449148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+teEd ll ++v+ +G             +R++k+c++rw++yl
    Jcr4S06435.10 14 RGSWSTEEDHLLREYVRIHGL------------KRCGKSCRLRWLNYL 49
                     89******************4............5999*********97 PP
2Myb_DNA-binding513.3e-165599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w++ 
    Jcr4S06435.10 55 RGNITEDEEDLIFRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 99
                     7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.276949IPR017930Myb domain
SuperFamilySSF466894.59E-231296IPR009057Homeodomain-like
SMARTSM007172.4E-41351IPR001005SANT/Myb domain
PfamPF002492.4E-71449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-141556IPR009057Homeodomain-like
PROSITE profilePS5129426.04850104IPR017930Myb domain
SMARTSM007175.4E-1654102IPR001005SANT/Myb domain
PfamPF002492.2E-145599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2557104IPR009057Homeodomain-like
CDDcd001672.62E-1159100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRSPNFPKE GLSRGSWSTE EDHLLREYVR IHGLKRCGKS CRLRWLNYLR PDIKRGNITE  60
DEEDLIFRLH KLLGNRWSLI AGRLPGRTDN EIKNYWNSTL KKKIDKKQHK KKIVNADIAV  120
KTTISSHESP QVKNVIEESD PSDDGLLPST CDWEMMTVDI NGEQINLSDF LQTEDFSNII  180
LPATHEGEAD FFSEAILKDW TGKELFPLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121055109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346870.0KM034687.1 Jatropha curcas clone JcMYB067 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077551.11e-140transcription factor WER
TrEMBLA0A097HUN71e-139A0A097HUN7_JATCU; MYB family protein
STRINGPOPTR_0006s23810.12e-57(Populus trichocarpa)
STRINGXP_004303467.12e-57(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-47myb domain protein 3