PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06450.20

Common Name

JCGZ_15600, LOC105630434

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 393aa MW: 44403 Da PI: 6.6177

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06450.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.6	1.7e-51	16	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLp ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++ Jcr4S06450.20 16 MLPGFRFHPTDEELVGFYLKRKIQQRPLSV-ELIKQLDIYKYDPWDLPIldaeLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 110 579*************************.89**********9446654556899******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Jcr4S06450.20 111 YSSeGNKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 147 956667***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-56	12	180	IPR003441	NAC domain
PROSITE profile	PS51005	56.218	16	180	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	18	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDHERNDHVD KMDEVMLPGF RFHPTDEELV GFYLKRKIQQ RPLSVELIKQ LDIYKYDPWD 60 LPILDAELAT TGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGNKCIG 120 LKKSLVFYKG RAAKGIKTDW MMHEFRLPSL TDHSAPPKRF IDKTIIPAND SWAICRIFKK 180 TNSTTQRAIS QSWISPIPEI SASSSLLAKG SQNMNLPLTT DQTCSAAQLN YNYNNNNDIT 240 NFSPLEFNSC YKPPISNGEN FFFSPIESTI APSKCTVDVS SMLLNMSSSV LGESGSIDLG 300 GLQEDRHCNS NSFTLSCLPQ VMQVWDNPSS GDNENINAMS FKHVNGTNMD DQWQTVRSIG 360 FPFSLGDAWK PNLLWDSSSS DMSTSFATAK CYT

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDHERNDHVD KMDEVMLPGF RFHPTDEELV GFYLKRKIQQ RPLSVELIKQ LDIYKYDPWD  60
LPILDAELAT TGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGNKCIG  120
LKKSLVFYKG RAAKGIKTDW MMHEFRLPSL TDHSAPPKRF IDKTIIPAND SWAICRIFKK  180
TNSTTQRAIS QSWISPIPEI SASSSLLAKG SQNMNLPLTT DQTCSAAQLN YNYNNNNDIT  240
NFSPLEFNSC YKPPISNGEN FFFSPIESTI APSKCTVDVS SMLLNMSSSV LGESGSIDLG  300
GLQEDRHCNS NSFTLSCLPQ VMQVWDNPSS GDNENINAMS FKHVNGTNMD DQWQTVRSIG  360
FPFSLGDAWK PNLLWDSSSS DMSTSFATAK CYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	3	186	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	3	186	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	3	186	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	3	186	3	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-51	3	186	3	171	NAC domain-containing protein 19
4dul_B	1e-51	3	186	3	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775310	0.0	KC775310.1 Jatropha curcas NAC transcription factor 032 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067635.1	0.0	protein FEZ
Swissprot	Q9ZVH0	1e-108	FEZ_ARATH; Protein FEZ
TrEMBL	R4N7L9	0.0	R4N7L9_JATCU; NAC transcription factor 032
STRING	cassava4.1_022922m	1e-180	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-103	NAC family protein

Link Out ? help Back to Top
Entrez Gene	105630434

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]