PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06471.20
Common NameJCGZ_26464, LOC105646441
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 257aa    MW: 29390.8 Da    PI: 6.8644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06471.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
    Jcr4S06471.20 14 KGAWSQEEDDKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWINYL 61
                     79******************99************************97 PP
2Myb_DNA-binding55.21.7e-1768112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ ++eE++l++++++q+G++ W++Ia++++ gRt++++k++w+++l
    Jcr4S06471.20  68 GNYSKEEEDLIIRLHEQFGNK-WSKIAAKLP-GRTDNEIKNYWHSHL 112
                      789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-22864IPR009057Homeodomain-like
PROSITE profilePS5129416.958961IPR017930Myb domain
SuperFamilySSF466891.76E-3011108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002495.2E-141461IPR001005SANT/Myb domain
CDDcd001671.83E-91661No hitNo description
PROSITE profilePS5129425.53362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2665115IPR009057Homeodomain-like
SMARTSM007171.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.7E-1668112IPR001005SANT/Myb domain
CDDcd001674.74E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVRAPFFDKN GLKKGAWSQE EDDKLRAYVQ RYGHWNWREL PKFAGLSRCG KSCRLRWINY  60
LRPGVKHGNY SKEEEDLIIR LHEQFGNKWS KIAAKLPGRT DNEIKNYWHS HLKRRAKKSE  120
SSNGMKEQCS TETLCEVSQT RNLKIESYIA KTPYSHPILE SYPLSAEPSS SEVSHLSSAD  180
SCLVTASATS CNVEDRVSYS FETFEDTSGD FWTQPFVADQ DGYILSVLDG GFTSPSFTSY  240
DDSVDLFYQV MKELSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347070.0KM034707.1 Jatropha curcas clone JcMYB087 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087685.10.0myb-related protein Myb4
TrEMBLA0A067JXL70.0A0A067JXL7_JATCU; MYB family protein
STRINGcassava4.1_014242m1e-124(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-56myb domain protein 58
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]