PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06478.40

Common Name

JCGZ_23378, LOC105647578

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 326aa MW: 37049.5 Da PI: 5.2842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06478.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6e-13	127	178	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ Jcr4S06478.40 127 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 178 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.37E-13	125	182	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-13	125	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.326	126	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-16	126	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-10	127	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-10	132	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MALEAVVYQQ DLFGHSTKEF YNLLGGNWSY EFGQLEKEDH HDYNKAAGCF ENFLDNQTEN 60 GLHGDWNNSS SSPPSIMPHL SEMLQINPSS EPNNDSNQLL ESPSTMPARA KRRRSRSRKN 120 KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPDSYVQR GDQASIIGGA INFVKELEQR 180 LQLLGGEKQV KEEKSQGEEC PLPFSDFFTF PQYSTTRSDS SVTGVNETMS ATTESSIADI 240 EVTMVESHAN VKIRSKRRPK QLLKIVSGLH SMRLTILHLN VTTLDQIVLY SLSVKVEDDC 300 NLSSVDEIAT AVYEMLGRIQ EEYSVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	138	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089103.1	0.0	transcription factor bHLH94
Swissprot	Q9C7T4	4e-81	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A067JU77	0.0	A0A067JU77_JATCU; Uncharacterized protein
STRING	XP_002512342.1	1e-163	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-74	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105647578

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]