PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06510.20

Common Name

JCGZ_21764, LOC105649833

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 252aa MW: 28539.8 Da PI: 7.6238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06510.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Jcr4S06510.20 85 FECQYCFKEFANSQALGGHQNAH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	81	112	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-4	82	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.24	85	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010026	Biological Process	trichome differentiation
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEKETSNVFS STLDGENCHS AESCVEKKLK LFGFELNPCR NEESYPKGCA EGDESVNSSN 60 TVSHEGEKPV MHKDSTKEPE DNKKFECQYC FKEFANSQAL GGHQNAHKKE RLKKKRLQLQ 120 ARKASISCYL QPLQNNLSYN NSTQWFYDPS CCSPEFSLYE ESQISFTPYD QDSHINTGSQ 180 LSKWYGMGIP AQAPFQQENC MFTLTRADRS RNSRNVIRKP SALPASKQTC KSLDLQLGLS 240 LQSNIRSSTP FP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092029.1	0.0	zinc finger protein 5
Refseq	XP_020540991.1	0.0	zinc finger protein 5
Refseq	XP_020540992.1	0.0	zinc finger protein 5
Refseq	XP_020540993.1	0.0	zinc finger protein 5
TrEMBL	A0A067JEW3	0.0	A0A067JEW3_JATCU; Uncharacterized protein
STRING	cassava4.1_014634m	1e-118	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9594	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	1e-11	zinc finger protein 5

Link Out ? help Back to Top
Entrez Gene	105649833

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]