PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06525.10

Common Name

JCGZ_05538, LOC105628112

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YC

Protein Properties

Length: 213aa MW: 24565.8 Da PI: 10.4682

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06525.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	31.9	2.8e-10	114	194	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P+arik+i+ +e ++ ++ l+ ka e fi ++ + + ++++l ++++v + fdfl d vp Jcr4S06525.10 114 TFRFPMARIKRIITREESGLQLNQDVVFLVNKATEKFIQQFCEEGYDCSVRDRKKSLGYKHLSSVVREQRRFDFLSDFVPD 194 4579***************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	4.4E-13	116	179	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-20	117	193	IPR009072	Histone-fold
SuperFamily	SSF47113	2.35E-15	133	195	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MASTKKSKNE EDKKKKRIKV VASTKSPKQE KNKDKKKKKK QNNTANGTTR RSESLDVMVI 60 SSSSCGSQES EEETVKRSET KKRSITSTNR TKKSNSKRKE QAEEDNEEGE AEITFRFPMA 120 RIKRIITREE SGLQLNQDVV FLVNKATEKF IQQFCEEGYD CSVRDRKKSL GYKHLSSVVR 180 EQRRFDFLSD FVPDKLNAQD ALAQMKLLET RQG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012064845.1	1e-152	DNA polymerase epsilon subunit C isoform X2
TrEMBL	A0A067L6H2	1e-151	A0A067L6H2_JATCU; Uncharacterized protein
STRING	cassava4.1_015531m	5e-67	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12016	30	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-32	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Entrez Gene	105628112

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]