PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06621.10

Common Name

JCGZ_23923, LOC105645472

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 145aa MW: 17294.5 Da PI: 4.2829

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06621.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.6	8.7e-17	109	145	5	41
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGI 41 +++e+++kyF+lpi++AAke++v+lTvLK++CR+++I Jcr4S06621.10 109 LEMEEIKKYFDLPITKAAKEMNVGLTVLKKRCRELNI 145 789*******************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.637	91	145	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-13	109	145	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MDSKRTDQEL LLNIPKNEYS FDTDWLNLDD TFQKVSEFPP LESFFELDSL TLPHYKNYGF 60 EGFEEINLDI DDYSFLDSTL LLDNPYDRYC ENVEEERRLR NGRKMSVPLE MEEIKKYFDL 120 PITKAAKEMN VGLTVLKKRC RELNI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086468.1	1e-101	protein RKD4
TrEMBL	A0A067JSK1	1e-100	A0A067JSK1_JATCU; Uncharacterized protein
STRING	cassava4.1_021485m	4e-29	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-15	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	105645472

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]