PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06887.40
Common NameJCGZ_12960
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TCP
Protein Properties Length: 354aa    MW: 39920.2 Da    PI: 9.6907
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06887.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.63.1e-441092462133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....kaa 91 
                    + kkdrhskihT++g+RdRRvRls+++a++fFdLqd+LGfdk+skt+eWLl ++k+aik  +   ss++s++  ++  +  s +n   +    +  
  Jcr4S06887.40 109 PLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVAHKRSSPSSSAssSSTCEALSPENG--EiameEGI 202
                    679*************************************************************7666644422112222222222..24466333 PP

            TCP  92 ksaa.kskksqksaasalnlak.esrakarararertrekmrik 133
                     s+  ++kk++k ++ + nla+ e r karararertr km ++
  Jcr4S06887.40 203 VSTGkNEKKAKKLEKYTTNLAAkELRVKARARARERTRIKMLNQ 246
                    33333566666666666676666******************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.852111169IPR017887Transcription factor TCP subgroup
PfamPF036346.2E-41111243IPR005333Transcription factor, TCP
PROSITE profilePS5137010.643225242IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFPSTINATI NPFPYLSSFS SYNPSPFFLN NHEATTSTDV FFQPTFSLLP NNPLTSSLVS  60
TETLSSINAK QDINCYNIDQ IDGESCYKQS QQLQQQQPSS CVFVSAKKPL KKDRHSKIHT  120
SQGLRDRRVR LSIQIARKFF DLQDMLGFDK ASKTLEWLLS KSKRAIKRVA HKRSSPSSSA  180
SSSSTCEALS PENGEIAMEE GIVSTGKNEK KAKKLEKYTT NLAAKELRVK ARARARERTR  240
IKMLNQYLLS NDELVDELPD AKENNIIEES IAIERKLKPS SVMGYQQNLL MLRDLTCNNS  300
NYNNLNLPNF TSNWEINNAI ARSSFCAITN MNRSAGLHLY GKLREAENGS QCLH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077933.20.0transcription factor CYCLOIDEA
TrEMBLA0A067KM920.0A0A067KM92_JATCU; Uncharacterized protein
STRINGcassava4.1_022722m2e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-29TCP family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]