PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06895.10

Common Name

JCGZ_07608

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 303aa MW: 34424.5 Da PI: 6.5955

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06895.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l ++k +G g W+ +++ g++R++k+c++rw++yl Jcr4S06895.10 14 RGAWTALEDKILTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52	1.7e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ Jcr4S06895.10 67 RGNISHDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999***************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.676	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.76E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.102	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-23	65	115	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.75E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILTSYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKANAQS 120 NSPQFKQTPS TKKMLAYTEP NSSTKPSKSQ KPTQVIHTKA NRCTKVFIPL QSPPPLLPEI 180 HNTTPTALNQ PPENQDFDCP SQLIQYCGSN EEHIQNYDLD FMNIDRHDQF EGSDNNEDVG 240 LVMNNYGHDS LSHYQSLPSL EEEPRPPTIN DEWATTSVCL GDDDNINLDL DSLGFLLDSE 300 EWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM600732	0.0	HM600732.1 Jatropha curcas R2R3 MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001292965.1	0.0	uncharacterized protein LOC105638090
TrEMBL	A0A067KD20	0.0	A0A067KD20_JATCU; MYB family protein
STRING	POPTR_0006s23840.1	1e-108	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-62	myb domain protein 7

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]