PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07369.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 499aa    MW: 55990.4 Da    PI: 4.4155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07369.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17.2e-53201462128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    ppGfrFhPtdeelv +yLk+k+ +++l+l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat +gyWkatgkd++v++ 
  Jcr4S07369.20  20 PPGFRFHPTDEELVLYYLKRKICKRRLRL-DIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATGRGYWKATGKDRNVTC- 113
                    8***************************9.99**************96446788999**************************************. PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ vg+kktLvfy+grap+ge+tdWvmhey+l
  Jcr4S07369.20 114 NSRIVGVKKTLVFYRGRAPSGERTDWVMHEYTL 146
                    999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-6118169IPR003441NAC domain
PROSITE profilePS5100555.91219169IPR003441NAC domain
PfamPF023655.5E-2820146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAVMAGSCLA ADGGDDKAWP PGFRFHPTDE ELVLYYLKRK ICKRRLRLDI IRELDVYKWD  60
PEELPGQSIL KTGDRQWFFF SPRDRKYPNG ARSNRATGRG YWKATGKDRN VTCNSRIVGV  120
KKTLVFYRGR APSGERTDWV MHEYTLDEDE LMRCPNVKEY YALYKVYKKS GPGPKNGEQY  180
GAPFKEEDWL DDAEAQLNNS LTPVKQQNVV IPPLDNMKAI ALVEQPLNEL EDFMKQLAAE  240
NLVDQMQISG YTNGLLQVAA DEETQSTLVD PSSREIIFSE QLTINLDQQP SFCEDDFLEM  300
DDLIGPGPTL SNTEKPVENL GFDGFDGLSE FDLYHDVALF FHEMEPVRQE TDSHVNEAGF  360
QLQHDTVANQ VNYQLQPHSG VNDVSYLEPQ AFGPDQLWVH DQGSNVLTTT EAINGTLSHP  420
TPVAVLVSLP FRALDQLGVV SEPSNNPTIA NGNQIGGEDD SNSGWFSSAL WTFVESIPTT  480
PASAAESPLT RPANARRGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-482014616140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845RKICKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753270.0KC775327.1 Jatropha curcas NAC transcription factor 049 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073984.10.0NAC domain-containing protein 17
TrEMBLR4NHR30.0R4NHR3_JATCU; NAC transcription factor 049
STRINGcassava4.1_004386m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-119NAC domain containing protein 17