PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07414.10

Common Name

JCGZ_06480, LOC105628482

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 1607aa MW: 177219 Da PI: 6.219

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07414.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	1584	1607	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C++ H+ Jcr4S07414.10 1584 GQRVCK-FYENGYCKKGASCSYLHP 1607 6799.6666***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	4.9E-9	120	178	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	8.4E-8	121	171	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50016	8.556	124	190	IPR019787	Zinc finger, PHD-finger
CDD	cd15568	1.54E-19	126	171	No hit	No description
SMART	SM00249	4.9E-7	126	172	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	127	187	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.245.10	5.0E-25	357	443	IPR003121	SWIB/MDM2 domain
SMART	SM00151	0.0018	357	440	IPR019835	SWIB domain
SuperFamily	SSF47592	8.94E-20	357	434	IPR003121	SWIB/MDM2 domain
Pfam	PF02201	2.1E-14	376	433	IPR003121	SWIB/MDM2 domain
SMART	SM00719	2.6E-48	498	608	IPR004343	Plus-3 domain
PROSITE profile	PS51360	26.099	498	631	IPR004343	Plus-3 domain
SuperFamily	SSF159042	5.1E-32	499	627	IPR004343	Plus-3 domain
Pfam	PF03126	4.5E-23	503	606	IPR004343	Plus-3 domain
SuperFamily	SSF55277	2.22E-14	844	900	IPR003169	GYF domain
PROSITE profile	PS50829	14.041	847	901	IPR003169	GYF domain
SMART	SM00444	2.4E-14	848	903	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	3.4E-15	849	900	IPR003169	GYF domain
Pfam	PF02213	3.5E-9	850	894	IPR003169	GYF domain
PROSITE profile	PS50103	15.065	1582	1607	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	1583	1606	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-5	1584	1607	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	1586	1606	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010964	Biological Process	regulation of chromatin silencing by small RNA
GO:0032776	Biological Process	DNA methylation on cytosine
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0042393	Molecular Function	histone binding

Sequence ? help Back to Top
Protein Sequence Length: 1607 aa Download sequence Send to blast
MEQQQVQLQE QSKKKDGEEE YRPCIEESRE QRIFDNSLPG ADLMTIDQCE TIREMDDSQL 60 VGPPPSTAVA ARDVDMVDVE VRTASKVVDM TPAKRKRGRP PRIQGKTGPP PPPQQPQRKK 120 RDEEDVCFIC FDGGSLVLCD RRGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSGCQKAS 180 HYMCYTCTYS LCKGCTKDAD YVGVRGNKGF CGTCLRTIML IENVKLANAE TVQVDFDDKT 240 SWEYLFKIYW VYLKAKLSLT IDELTRAKNP WKGDELSKAK NSWKGAVILA PKEISRGQLY 300 HGNDEKGSFT DNCCGNLEAN HSKRRKTKDQ PNFLNENYSI LMEKLGVDKV TPLPEGTMWA 360 TKELLELVAH MRNGDTSVLS QFDVQALLLE YIKRNNLRDP RQKSQIICDS RLANMFGRPR 420 VGHFEMLKLL EYHYLIKEKS SADDTVGVGV ADTAGGQVEA ARSSDSQMIV GNDKRRKSRK 480 KMDERSPLIN PNADEYAAID VHNINLLYLK RDLIENLMDD SEKFHENVVG SFVRIRISGG 540 DQRQDMHRLV QVVGTSKVAE SYQVGSKTTN VMLEILNLNK KEVVSIDAIS NQEFSEEECS 600 RLHQSIKCGL IKQLKVGEIL EKAMVLKPVK VSDFQSAKVE LFTFPKELRF FFVPISYRLS 660 YILIGXECVE KLELLKSPKE CQRRLLEIPN IHADPNMDPS HESEEDAGES NIKKQGDHAR 720 ERNTGVGRKG IELNSPVREG DLNNAGNMAL TNLAAACEQS INTCTTFYVD KDGTTRVHDR 780 TSESMWSKEG GALGLSSENT SKNLFGSSDS VNDKAAVQSE THTGVAPSVI PPLSPEREQL 840 IGDFETEKLW HYQDPFGIVQ GPFCMMQLRK WSTSGLFPLD FRVWRINEKQ EDSILLTDAL 900 VGQYSKQLLQ PCNSHLEPQE ATVASNDAGK NWKSGFSLST DASWLDGKKV DHDSKPVQND 960 VNIHGGGDSD LVKSNNGLGS HSSTWTKTVD VTMDNDAQAQ SSLQGWDLSK DSKAWTGQSR 1020 ICGSLPSASS PGDLIGTPSN QVREEHGDEK WSSNTNSHRN IDDQTNARET DVKRKRLDSE 1080 GHSNQSSGQN WRTQPITSSS SGWDSNSGFV SAAKSIGKSE LHQEIDFSDL LSPRPKQSHE 1140 DSKDDVAKNK LPLTSNVPVQ DSGPTWSTAS SLVVGEWGGY SSHPKPSVEE WDSNHVSASS 1200 LKPTEGASDH AATPTSGTGP LTHSSSSHPT IDTSSWQPIV PEPNEFCSLV DESVSDLLAE 1260 VEAMESLGLP SPTSKMSCGG ELTPGSDNDC FSPVEPFSPA PDPGKSDALS STSDIHMPSQ 1320 LPAADVVLRL SHTPSQPTVT DELAVSQMHS RLAVTDKHHP LPQMPPRSIV QDEPLGASPM 1380 PQSTLTEEPL GLWHTDVLDA QKSFSRHSPS SAEVVGDTKR SDVSVNQWET RSEPLASSTI 1440 NQREAGSDIR SRTSSSVGQW EAGSDSQRPA SSTADASYGT IKGNANSNQV VSQGNTNMIW 1500 GTGHGSVQQQ ASSNSAISTG ILGSWGSQHQ QRHGGDNRFA GSRDHRNYYQ GRDSGFSRDR 1560 SSWNRQPAYG AGNGGGTFKA QGKGQRVCKF YENGYCKKGA SCSYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1607 aa Download sequence Send to blast

MEQQQVQLQE QSKKKDGEEE YRPCIEESRE QRIFDNSLPG ADLMTIDQCE TIREMDDSQL  60
VGPPPSTAVA ARDVDMVDVE VRTASKVVDM TPAKRKRGRP PRIQGKTGPP PPPQQPQRKK  120
RDEEDVCFIC FDGGSLVLCD RRGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSGCQKAS  180
HYMCYTCTYS LCKGCTKDAD YVGVRGNKGF CGTCLRTIML IENVKLANAE TVQVDFDDKT  240
SWEYLFKIYW VYLKAKLSLT IDELTRAKNP WKGDELSKAK NSWKGAVILA PKEISRGQLY  300
HGNDEKGSFT DNCCGNLEAN HSKRRKTKDQ PNFLNENYSI LMEKLGVDKV TPLPEGTMWA  360
TKELLELVAH MRNGDTSVLS QFDVQALLLE YIKRNNLRDP RQKSQIICDS RLANMFGRPR  420
VGHFEMLKLL EYHYLIKEKS SADDTVGVGV ADTAGGQVEA ARSSDSQMIV GNDKRRKSRK  480
KMDERSPLIN PNADEYAAID VHNINLLYLK RDLIENLMDD SEKFHENVVG SFVRIRISGG  540
DQRQDMHRLV QVVGTSKVAE SYQVGSKTTN VMLEILNLNK KEVVSIDAIS NQEFSEEECS  600
RLHQSIKCGL IKQLKVGEIL EKAMVLKPVK VSDFQSAKVE LFTFPKELRF FFVPISYRLS  660
YILIGXECVE KLELLKSPKE CQRRLLEIPN IHADPNMDPS HESEEDAGES NIKKQGDHAR  720
ERNTGVGRKG IELNSPVREG DLNNAGNMAL TNLAAACEQS INTCTTFYVD KDGTTRVHDR  780
TSESMWSKEG GALGLSSENT SKNLFGSSDS VNDKAAVQSE THTGVAPSVI PPLSPEREQL  840
IGDFETEKLW HYQDPFGIVQ GPFCMMQLRK WSTSGLFPLD FRVWRINEKQ EDSILLTDAL  900
VGQYSKQLLQ PCNSHLEPQE ATVASNDAGK NWKSGFSLST DASWLDGKKV DHDSKPVQND  960
VNIHGGGDSD LVKSNNGLGS HSSTWTKTVD VTMDNDAQAQ SSLQGWDLSK DSKAWTGQSR  1020
ICGSLPSASS PGDLIGTPSN QVREEHGDEK WSSNTNSHRN IDDQTNARET DVKRKRLDSE  1080
GHSNQSSGQN WRTQPITSSS SGWDSNSGFV SAAKSIGKSE LHQEIDFSDL LSPRPKQSHE  1140
DSKDDVAKNK LPLTSNVPVQ DSGPTWSTAS SLVVGEWGGY SSHPKPSVEE WDSNHVSASS  1200
LKPTEGASDH AATPTSGTGP LTHSSSSHPT IDTSSWQPIV PEPNEFCSLV DESVSDLLAE  1260
VEAMESLGLP SPTSKMSCGG ELTPGSDNDC FSPVEPFSPA PDPGKSDALS STSDIHMPSQ  1320
LPAADVVLRL SHTPSQPTVT DELAVSQMHS RLAVTDKHHP LPQMPPRSIV QDEPLGASPM  1380
PQSTLTEEPL GLWHTDVLDA QKSFSRHSPS SAEVVGDTKR SDVSVNQWET RSEPLASSTI  1440
NQREAGSDIR SRTSSSVGQW EAGSDSQRPA SSTADASYGT IKGNANSNQV VSQGNTNMIW  1500
GTGHGSVQQQ ASSNSAISTG ILGSWGSQHQ QRHGGDNRFA GSRDHRNYYQ GRDSGFSRDR  1560
SSWNRQPAYG AGNGGGTFKA QGKGQRVCKF YENGYCKKGA SCSYLHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4gnd_A	9e-13	120	193	11	81	Histone-lysine N-methyltransferase NSD3
4gnd_C	9e-13	120	193	11	81	Histone-lysine N-methyltransferase NSD3
4gne_A	9e-13	120	193	11	81	Histone-lysine N-methyltransferase NSD3
4gnf_A	9e-13	120	193	11	81	Histone-lysine N-methyltransferase NSD3
4gng_A	9e-13	120	193	11	81	Histone-lysine N-methyltransferase NSD3
4gng_D	9e-13	120	193	11	81	Histone-lysine N-methyltransferase NSD3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065289.1	0.0	zinc finger CCCH domain-containing protein 44
TrEMBL	A0A067LE48	0.0	A0A067LE48_JATCU; Uncharacterized protein
STRING	XP_002533810.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1435	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	nucleic acid binding;zinc ion binding;DNA binding

Link Out ? help Back to Top
Entrez Gene	105628482

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]