PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07775.10

Common Name

JCGZ_08592, LOC105635555

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 95aa MW: 10269.7 Da PI: 6.498

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07775.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.7	8.1e-14	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Jcr4S07775.10 1 MVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAE 40 69*********************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.9E-11	1	38	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.627	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MVYEANARVR DPVYGCVGAI SSLQQQIDAL QTQLALAQAE VVHLRVRQTA ISTHGLSPAS 60 PTNSGSPSSR LIGQVKPIFD MDMVDQASLG EMWRC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074020.1	4e-64	LOB domain-containing protein 4
Swissprot	Q9SHE9	2e-24	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A067KK06	1e-62	A0A067KK06_JATCU; Uncharacterized protein
STRING	Gorai.011G051200.1	3e-48	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-20	LOB domain-containing protein 4

Link Out ? help Back to Top
Entrez Gene	105635555

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]