PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07855.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23099 Da    PI: 10.1608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07855.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-18946845
                   HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     qvtfskRr g++KKA+EL +LC++++a+i+fs +gk
  Jcr4S07855.30  9 SCQVTFSKRRIGLFKKANELAILCAMQIAIIVFSAEGK 46
                   569********************************997 PP
2SRF-TF45.78.2e-1569101335
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaev 35 
                    ++++s  qvtfskRr g++KKA+EL vLC+++ 
  Jcr4S07855.30  69 VKDNSSGQVTFSKRRIGLFKKANELTVLCAVQL 101
                    6788999***********************996 PP
3SRF-TF351.8e-111621901745
                    HHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  17 rngilKKAeELSvLCdaevaviifsstgk 45 
                    r g++KKA+EL +LC++++ ++ifs +gk
  Jcr4S07855.30 162 RIGLFKKANELAILCAMQIVIVIFSAEGK 190
                    67************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.67154IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-12153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-16159IPR002100Transcription factor, MADS-box
PfamPF003194.4E-19549IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-93152IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-559124IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-1167103IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.35367103IPR002100Transcription factor, MADS-box
PfamPF003191.4E-1270101IPR002100Transcription factor, MADS-box
SMARTSM004320.003149197IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.517153198IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-11158207IPR002100Transcription factor, MADS-box
PfamPF003191.3E-10162193IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKMMKHNNSC QVTFSKRRIG LFKKANELAI LCAMQIAIIV FSAEGKPFSL PEGNHSHSVT  60
QSWNRNEMVK DNSSGQVTFS KRRIGLFKKA NELTVLCAVQ LRLSYSLPKT IFSAGRKPFS  120
AGNPSIGANC DCRFLCWRET IFSAGGKSFS AGNLSMEYVV ERIGLFKKAN ELAILCAMQI  180
VIVIFSAEGK PFSAGNPSME YVAERFLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072482.18e-21agamous-like MADS-box protein AGL29
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-16AGAMOUS-like 29