PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07969.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 149aa    MW: 17397.2 Da    PI: 9.8552
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07969.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.57.8e-1257135191
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +fY+e+++  GF v+k++ +k    g+ + +  +C k  k ++e+          +++r++C  +++ +++++g w+vtk++ +HnH+l p
  Jcr4S07969.10  57 EFYEEHGRLKGFGVTKKSAYKY--GGTYKYQIITCDKVRKLHDER----------TSKRIDCPPRVHASLRRTGMWVVTKVVRDHNHDLEP 135
                    6******************999..787788888999988777654..........569******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-857135IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MNFPLIESLY EFYEEHGRLK GFGVTKKSAY KYGVDLRCID KGSKQGMNFP LIDSLYEFYE  60
EHGRLKGFGV TKKSAYKYGG TYKYQIITCD KVRKLHDERT SKRIDCPPRV HASLRRTGMW  120
VVTKVVRDHN HDLEPSMSRL MIGVIFTVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673337.12e-34protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-09FAR1 family protein