PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S08090.20

Common Name

JCGZ_22638, LOC105646194

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 146aa MW: 15974.1 Da PI: 7.3032

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S08090.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	149	1.3e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C++dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la Jcr4S08090.20 13 PCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAI 108 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e Jcr4S08090.20 109 AQAE 112 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.22	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-46	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKESGRKQGA LSPCAACKLL RRRCSQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LPEHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID SLQTQLAIAQ AEVVHMRMSQ 120 YGSSSTPSSL DMVVDQANVG ESLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-53	9	134	7	130	LOB family transfactor Ramosa2.1
5ly0_B	6e-53	9	134	7	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087393.1	1e-105	LOB domain-containing protein 4
Swissprot	Q9SHE9	6e-71	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A067JQI0	1e-104	A0A067JQI0_JATCU; Uncharacterized protein
STRING	cassava4.1_018537m	2e-99	(Manihot esculenta)
STRING	XP_002513395.1	2e-99	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-66	LOB domain-containing protein 4

Link Out ? help Back to Top
Entrez Gene	105646194

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]