PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S08095.10

Common Name

JCGZ_09844

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 368aa MW: 42234.3 Da PI: 5.5195

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S08095.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	132.4	5e-41	81	242	1	162
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lLl A+av++++ a + L++l + +s +gd++qR++ayf+ +L+ar++ s y+ + ++ts +ee++a++ ++ vsP+++f+h+ Jcr4S08095.10 81 LIHLLLITATAVDENNIPSALQNLTELYQSVSLTGDSVQRVVAYFADGLSARVLTRESPFYEMIMKEPTS----EEEFMAVTHLYRVSPYYQFAHF 172 689**************************************************999999988777775....89999999********** PP GRAS 97 taNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetg 162 taNq Ile++e+e +++H+iDfd+ +G+QWp+L+q+ ++++ ++ lRiTg+g+ s eel+et+ Jcr4S08095.10 173 TANQVILEEFEKEagennnRALHVIDFDACYGFQWPSLIQSVSEKAtfSNRVFLRITGFGR----SIEELQETE 242 *******99998888899********************888889*******....888888875 PP
2	GRAS	66.7	4.5e-21	235	366	258	374
GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kv 344 +e l+ ++fdsl+ lp es er ++E+ lg+ei+ ++ +++ r e++e+W+ r+e+ GF ++ls+k qaklll+ + Jcr4S08095.10 235 IEELQETETMFDSLDDCLPLESLERLSIEKNHLGKEIKCMLNFDKENsYCPRFEKMETWKGRMESHGFAGLKLSSKCLIQAKLLLKirthycplQ- 329 7899999*********************************998884578*****************************97333222221. PP GRAS 345 ksdg......yrveee.sgslv.lgWkdrpLvsvSaWr 374 +dg +rv e+ +g ++ lgW+dr L+++SaWr Jcr4S08095.10 330 -FDGessnggFRVFERdDGKAIsLGWQDRCLLTASAWR 366 .2222222237775443777778************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.204	55	368	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-38	81	242	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MMEAIQEEDL LNLSLAIVTD RSSPERKRKR EIKALSFNPL NFYEGSEGKI FRLLQMREQM 60 LKPDSKRKGV VVLEDGKGLH LIHLLLITAT AVDENNIPSA LQNLTELYQS VSLTGDSVQR 120 VVAYFADGLS ARVLTRESPF YEMIMKEPTS EEEFMAVTHL YRVSPYYQFA HFTANQVILE 180 EFEKEAGENN NRALHVIDFD ACYGFQWPSL IQSVSEKATF SNRVFLRITG FGRSIEELQE 240 TETMFDSLDD CLPLESLERL SIEKNHLGKE IKCMLNFDKE NSYCPRFEKM ETWKGRMESH 300 GFAGLKLSSK CLIQAKLLLK IRTHYCPLQF DGESSNGGFR VFERDDGKAI SLGWQDRCLL 360 TASAWRCV

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MMEAIQEEDL LNLSLAIVTD RSSPERKRKR EIKALSFNPL NFYEGSEGKI FRLLQMREQM  60
LKPDSKRKGV VVLEDGKGLH LIHLLLITAT AVDENNIPSA LQNLTELYQS VSLTGDSVQR  120
VVAYFADGLS ARVLTRESPF YEMIMKEPTS EEEFMAVTHL YRVSPYYQFA HFTANQVILE  180
EFEKEAGENN NRALHVIDFD ACYGFQWPSL IQSVSEKATF SNRVFLRITG FGRSIEELQE  240
TETMFDSLDD CLPLESLERL SIEKNHLGKE IKCMLNFDKE NSYCPRFEKM ETWKGRMESH  300
GFAGLKLSSK CLIQAKLLLK IRTHYCPLQF DGESSNGGFR VFERDDGKAI SLGWQDRCLL  360
TASAWRCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-20	89	254	27	188	Protein SCARECROW
5b3h_A	6e-20	89	254	26	187	Protein SCARECROW
5b3h_D	6e-20	89	254	26	187	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM391918	0.0	KM391918.1 Jatropha curcas GRAS31 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295616.1	1e-164	uncharacterized protein LOC105650460
TrEMBL	A0A067J906	1e-162	A0A067J906_JATCU; GRAS31
STRING	EMJ00209	1e-119	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	2e-20	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	105650460

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]