PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08449.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 193aa    MW: 21061.2 Da    PI: 4.9734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08449.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000421941123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C ++F++   L  H++ H
  Jcr4S08449.10 19 YVCTICFRVFPSGQALGGHQNAH 41
                   9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.62E-51746No hitNo description
PfamPF139121.8E-71941IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3671946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDGDSSSGDT TASSVPRCYV CTICFRVFPS GQALGGHQNA HQYERSLRKN IPNILGAVLN  60
HPLPDDDDDD DDDLALTGSN FSGQHPSSGT SPGLNMQADG SQTEKGKGAQ NPVDQSKVKN  120
GYHPYQKPVE EETRRKLLTK NLLGELKPVH QLKEGEGEGE REREGLEKNS SGVDLELSLK  180
RKECLDLELK LGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076066.11e-140zinc finger protein 11
TrEMBLA0A067KRL94e-61A0A067KRL9_JATCU; Uncharacterized protein
STRINGcassava4.1_024753m2e-56(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1655245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-08zinc-finger protein 1