PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08587.40
Common NameJCGZ_01868, LOC105630009
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 119aa    MW: 13024.8 Da    PI: 10.1209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08587.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114365326
                   S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                   t+lC+f+a+ G C +G++CkF H+
  Jcr4S08587.40 43 TKLCKFWAK-GRCAFGSNCKFLHS 65
                   89*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-64066IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9674067IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-94365IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-94365IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.67E-1248117IPR017986WD40-repeat-containing domain
SMARTSM003201.6E-672111IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.1E-675116IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.7E-677111IPR001680WD40 repeat
PROSITE profilePS5029413.47579119IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.71979119IPR001680WD40 repeat
PROSITE patternPS00678098112IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDILVRTIDN PKPSFYDSSV GAKKPNNFYD SSVGAKKPNS QATKLCKFWA KGRCAFGSNC  60
KFLHSWYLSG NGFSMLARLQ GHKKAVVGIA LPSGSDQLYT GSRDGTVRVW DCKSGNCNH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067070.12e-82zinc finger CCCH domain-containing protein 48
RefseqXP_020533369.12e-82zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ25e-27C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A067LC604e-81A0A067LC60_JATCU; Uncharacterized protein
STRINGcassava4.1_021841m1e-29(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-29zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]