PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08625.10
Common NameJCGZ_04826, LOC105634181
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 431aa    MW: 48147 Da    PI: 8.217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08625.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-066385123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C++ F r  nL+ H r+H
  Jcr4S08625.10 63 YVCEICNQGFQRDQNLQMHRRRH 85
                   9*********************9 PP
2zf-C2H216.13.2e-05140162123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k +  +s++k H++t+
  Jcr4S08625.10 140 WVCEKCSKGYAVQSDYKAHLKTC 162
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.09E-56086No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976385IPR007087Zinc finger, C2H2
SMARTSM003550.00526385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355170104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-4131161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560140167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLDNTTTSTT TSSAAPSPSS DPLFPALDNG LTNKRKRKPA GTPDPDAEVV SLSPRTLLES  60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRETQEVK KRVYVCPEPS CLHHDPCHAL  120
GDLVGIKKHF RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDACTV RRTQPELQAL QPACSSRTAS STSPSSDANF SITPLQGLPI PKPSDQPVFL  240
YSSSDRYDAS TSSHHQEHNL ELQLLPSSTT RMLQNPDQER YPTNLKLSIG SSDRTIEKNN  300
DGNKEKNMAN DSTGEEAARL KEIANEQMKL AMAEKAYAEE ARQQAKRQLE MAELEFANAK  360
RIRQQSQAEL EKAQVLREQA TKKISSTIMQ ITCQACKQHF QAPAAAVAAQ ADETSLAMSY  420
MSSATTEGEG E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-18138188555Zinc finger protein JACKDAW
5b3h_F5e-18138188555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072389.10.0protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-172IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A067KTA40.0A0A067KTA4_JATCU; Uncharacterized protein
STRINGcassava4.1_008460m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-156C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  4. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  5. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  6. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]