PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S08640.20

Common Name

JCGZ_12708, LOC105637310

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 244aa MW: 27620.9 Da PI: 8.0485

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S08640.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.6	9.2e-48	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Pt+eelv++yL++k+e+++ el++vi+ +diy++ePw+Lpk ++++++++w+fF++r++++a+g r++r+t+sgyWkatg+ v Jcr4S08640.20 4 LPPGFRFYPTEEELVSFYLHNKLEERRQELNRVIPVTDIYNIEPWNLPKlageRCQGDTEQWFFFAPRQEREARGGRPRRTTASGYWKATGSPGYV 99 79**************************999***********657776677888******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Jcr4S08640.20 100 YSSDSKVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 ********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-49	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	50.114	4	162	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGDLPPGFRF YPTEEELVSF YLHNKLEERR QELNRVIPVT DIYNIEPWNL PKLAGERCQG 60 DTEQWFFFAP RQEREARGGR PRRTTASGYW KATGSPGYVY SSDSKVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEGAA DPSNTTVPKL RHEFSLCRVY ITSGSFRAFD RRPLEAVARE 180 TQLLGYAATT SAQDHRMVDN SSSPDTSCSG GDHADLPGTA GSANVDMVDG LPQPLWDWEQ 240 LNWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	4	165	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	4	165	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	4	165	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	4	165	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	4	165	20	171	NAC domain-containing protein 19
3swm_B	2e-35	4	165	20	171	NAC domain-containing protein 19
3swm_C	2e-35	4	165	20	171	NAC domain-containing protein 19
3swm_D	2e-35	4	165	20	171	NAC domain-containing protein 19
3swp_A	2e-35	4	165	20	171	NAC domain-containing protein 19
3swp_B	2e-35	4	165	20	171	NAC domain-containing protein 19
3swp_C	2e-35	4	165	20	171	NAC domain-containing protein 19
3swp_D	2e-35	4	165	20	171	NAC domain-containing protein 19
4dul_A	1e-35	4	165	17	168	NAC domain-containing protein 19
4dul_B	1e-35	4	165	17	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775315	1e-162	KC775315.1 Jatropha curcas NAC transcription factor 037 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076136.2	0.0	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	1e-103	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	R4N7M3	0.0	R4N7M3_JATCU; NAC transcription factor 037
STRING	cassava4.1_022893m	1e-139	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-105	NAC domain containing protein 90

Link Out ? help Back to Top
Entrez Gene	105637310

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]