PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08654.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 370aa    MW: 40713.1 Da    PI: 8.6169
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08654.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-091822191954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Jcr4S08654.10 182 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 219
                    554458******************************88 PP
2BELL89.14.8e-29581191172
           BELL  11 kLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    kLl+ + eV++rYk+y++q+q+v++sFe+vagl +a+pY++lAlka+S+hF++Lk+ai++q+
  Jcr4S08654.10  58 KLLTDMLEVHRRYKHYYQQMQAVVASFECVAGLSNAAPYANLALKAVSKHFKSLKNAITDQL 119
                    78877779***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-121117IPR006563POX domain
PfamPF075262.9E-2458116IPR006563POX domain
PROSITE profilePS5007111.904160223IPR001356Homeobox domain
SMARTSM003891.3E-9163227IPR001356Homeobox domain
CDDcd000863.79E-13163224No hitNo description
SuperFamilySSF466893.17E-17165230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27166227IPR009057Homeodomain-like
PfamPF059205.7E-19180219IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
LDLSARACSG FPEASTGGLE SDTGVSVLHK RGSVSRPGLP EAGMGVPLLL DFCINALKLL  60
TDMLEVHRRY KHYYQQMQAV VASFECVAGL SNAAPYANLA LKAVSKHFKS LKNAITDQLQ  120
FNIMGHGQVS HVKEETSRFG NIDKNLYVRP VQNSGFIEHQ PVWRPQRGLP ERAVIVLRAW  180
LFEHFLHPYP TDTDKLMLAK QTGLSRSQVS NWFINARVRL WKPMVEEIHM LETRQAQKSS  240
QMEEQNAKNS SDQVPPSDSV VSDNPSTSTR KAQDVPPKRT RNGLPNLPSG NEEPLNLSYN  300
SLSSHSPVGV GISTTGRSSG VSLTLGLHQN NGIGLSEPFP MHAAQCFGLG PETSSEGFVM  360
GGFETQNRHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15169227563Homeobox protein Meis2
3k2a_B1e-15169227563Homeobox protein Meis2
4xrm_A1e-15169227563Homeobox protein Meis2
4xrm_B1e-15169227563Homeobox protein Meis2
4xrs_A1e-15169226158Homeobox protein Meis1
4xrs_B1e-15169226158Homeobox protein Meis1
5bng_A1e-15169227159Homeobox protein Meis2
5bng_B1e-15169227159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087986.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM84e-90BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A067JKN10.0A0A067JKN1_JATCU; Uncharacterized protein
STRINGXP_002529855.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.19e-90TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]