PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08703.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 136aa    MW: 15780.8 Da    PI: 10.2926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08703.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.87.2e-22109055128
            NAM  55 ekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +  +fF++ +k+y+tg+rk+r+++      + +W++tgk+++v+s  g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Jcr4S08703.20  10 GQIRHFFHRPSKAYTTGTRKRRKVHteedgsETRWHKTGKTRPVFS-AGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 90 
                    4456******************744446555778************.9999**********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9181109IPR003441NAC domain
SuperFamilySSF1019412.09E-248109IPR003441NAC domain
PfamPF023652.4E-81490IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MITAGVSNDG QIRHFFHRPS KAYTTGTRKR RKVHTEEDGS ETRWHKTGKT RPVFSAGTVK  60
GFKKILVLYT NYGRQRKPEK TNWVMHQYHL GNSEEEKDGE LVVSKVFYQT QPRQCGSSST  120
IDQKFEKYEL LAIDNN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753740.0KC775374.1 Jatropha curcas NAC transcription factor 096 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091675.14e-84NAC domain-containing protein 10
RefseqXP_020541330.14e-84NAC domain-containing protein 10
RefseqXP_020541331.14e-84NAC domain-containing protein 10
RefseqXP_020541332.14e-84NAC domain-containing protein 10
SwissprotF4HY619e-67NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR4N5U21e-82R4N5U2_JATCU; NAC transcription factor 096
STRINGcassava4.1_012314m9e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1987955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.14e-69NAC domain containing protein 10