PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08876.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 238aa    MW: 27346.1 Da    PI: 7.02
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08876.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.5e-111453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd  l ++v+ +G g W+++a+  g        k+rw++yl
    Jcr4S08876.20 14 RGSWTAEEDHVLREYVRIHGEGKWAKVAKATG--------KLRWLNYL 53
                     89****************************99........77887775 PP
2Myb_DNA-binding51.91.8e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
    Jcr4S08876.20  59 RGNITEDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNSI 103
                      7999******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.409953IPR017930Myb domain
SuperFamilySSF466891.05E-2412100IPR009057Homeodomain-like
SMARTSM007171.3E-71355IPR001005SANT/Myb domain
PfamPF002495.6E-81452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-151560IPR009057Homeodomain-like
PROSITE profilePS5129425.54954108IPR017930Myb domain
SMARTSM007172.9E-1658106IPR001005SANT/Myb domain
PfamPF002494.7E-1559103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2561108IPR009057Homeodomain-like
CDDcd001673.08E-1163104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRCPHFPKE GLNRGSWTAE EDHVLREYVR IHGEGKWAKV AKATGKLRWL NYLRPNIKRG  60
NITEDEEDLI IRLHNLLGNR WSLIAGRLPG RTDNEIKNYW NSILKKKVDN KQQNKKITNA  120
DIAVKPTVSI HESLQVKESD PSGDDGTLPN TCDWDLMTFE VKGEQFNLSD FLQTEDFSNV  180
IVPATEDGEA DFFSEAILKN WTSRGIVFCL SLIKSLFFKS NVLDPFLFFC PFKCSFYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241210825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346880.0KM034688.1 Jatropha curcas clone JcMYB068 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077552.11e-145transcription factor WER
TrEMBLA0A097HUQ71e-143A0A097HUQ7_JATCU; MYB family protein
STRINGXP_009334744.19e-55(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.18e-45MYB family protein