PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08972.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HB-other
Protein Properties Length: 752aa    MW: 85224.6 Da    PI: 8.9492
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08972.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.2e-19212267257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    +kR   t+ q+ +Le+++++++yp++e+++eLA+++gLte+q++ WF+ rR k+kk
  Jcr4S08972.10 212 SKRILKTPAQVMALEKFYNEHNYPTEEMKTELAEQIGLTEKQISSWFCHRRLKDKK 267
                    589999************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015681.3E-1490148IPR006458Ovate protein family, C-terminal
PROSITE profilePS5175414.51492151IPR006458Ovate protein family, C-terminal
PfamPF048443.9E-1696148IPR006458Ovate protein family, C-terminal
Gene3DG3DSA:1.10.10.609.0E-22196267IPR009057Homeodomain-like
SuperFamilySSF466897.7E-18206269IPR009057Homeodomain-like
PROSITE profilePS5007116.795208268IPR001356Homeobox domain
SMARTSM003892.0E-19210272IPR001356Homeobox domain
PfamPF000463.7E-16213267IPR001356Homeobox domain
CDDcd000861.39E-16213267No hitNo description
PROSITE patternPS000270243266IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MKSYREYKNQ KLQRRRCKAL CCSCRLSVSS SEEETESSDN SDRYASVSSL AHAMVEERLD  60
QMIRERQEEA RHSKEKRMLK HEGIKFIIMV AVEKCSYDPR EDYRESMVEM IMANRLEEPK  120
DLRSLLNYYI SMNSQEYHGI LLQVFPEVNA LFNVFLKWLP CENHMKNCLR QHIAGKVKLI  180
SLNGQYSVSN EINKLHGEVH SEENRVSPEK NSKRILKTPA QVMALEKFYN EHNYPTEEMK  240
TELAEQIGLT EKQISSWFCH RRLKDKKLSR DDTGANGRQD RSSGIFQDRG SGLRQDSCGS  300
TKQGDYRKAD PKEVESQRLY GHNLPAADVT YDRTSRYTGN VNGVDDTSSE SSSSLQDKLF  360
SQSEDPHDLK SSGYVTQNGA SRPLIPKNSN NMGYKPSGYL KVKGEIENAA ITAVKRQLGK  420
HYREDGPPLG VEFQPLPPGA FSSSIRDPVN VFLGTHLGPL LTEAQCLCLN GIEVGPIWQG  480
VPRPARTCSA ALDLGAFYVG DLARNNSPEV SGVHKHTNIN SRQELYNFKM SSQDSFMEGP  540
NFNLKNTCDS HDKKSHNQLK QKSGSYNYSN SNPGVKSAID KYDDLAAETS IRNSKRNYKI  600
SSKHVVEGIR PDIVSSDQYP NGGRVISEQT DPWLHDYGNI SPNIVQRTDY MPKPSNLIPG  660
SSKSLDVEER PLSSRTSKEK LYGEMKGAKE YRDPVRARMH STNDMTVSKR FRAELPQQEH  720
VTKASFSNMH RKTNSTKGLD WLLSKARSLA VQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065911.10.0homeobox-DDT domain protein RLT1 isoform X1
TrEMBLA0A067LGJ70.0A0A067LGJ7_JATCU; Uncharacterized protein
STRINGcassava4.1_006913m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-87HB-other family protein