PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09200.10
Common NameJCGZ_25393, LOC105647152
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 244aa    MW: 28002.3 Da    PI: 5.2391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09200.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM805.3e-2591332128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF Pt+eelv++yL++k++++   ++++ ik++ d+y+ ePw++   ++++  + yf++ ++ k+++ +r++r+t sg+W     +k++ + 
  Jcr4S09200.10   9 SVGYRFCPTEEELVCFYLQEKLHKTLPVIADAvIKTLdDLYSDEPWNIF--CNETPANGYFYVFTKLKTRSANRSKRTTPSGTWTGRS-SKDIPC- 100
                    68********************99986665655999999*********6..34445678999999999999*************8654.477877. PP

            NAM  96 kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                     ++ + ++k +vf  kg+a ++++ +W+mhe++l
  Jcr4S09200.10 101 -RNITYVRKYFVFEaKGEAGSSSNGHWTMHEFSL 133
                    .67899*******9788999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-266150IPR003441NAC domain
PROSITE profilePS5100529.3018150IPR003441NAC domain
PfamPF023652.6E-1710133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAENPFMLSV GYRFCPTEEE LVCFYLQEKL HKTLPVIADA VIKTLDDLYS DEPWNIFCNE  60
TPANGYFYVF TKLKTRSANR SKRTTPSGTW TGRSSKDIPC RNITYVRKYF VFEAKGEAGS  120
SSNGHWTMHE FSLKDEGFKG DYVLCKIKRE DKSEQGTVAT VPFLDGKKRK SSVDKEEEND  180
NSKKMRQDNL SPVNSNSSWH LSNEGLVDYN SSFSNKIAEI EAPINETDIG FYDNLLDELL  240
ERWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753650.0KC775365.1 Jatropha curcas NAC transcription factor 087 gene, complete cds.
GenBankKC7753660.0KC775366.1 Jatropha curcas NAC transcription factor 088 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088537.11e-180NAC domain-containing protein 30
TrEMBLR4N7T51e-179R4N7T5_JATCU; NAC transcription factor 087
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-16vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]