PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09242.20

Common Name

JCGZ_06867, LOC105650416

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 384aa MW: 43490.5 Da PI: 6.5124

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09242.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	185.5	1.2e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdee++++yL++kv ++++++ +i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ k Jcr4S09242.20 16 LPPGFRFHPTDEEIITHYLTEKVMNSSFSA-CAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGK 110 79***********************999.67***********99999*************************************99 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 + lvg+kktLvfy+grapkgekt+Wvmheyrle Jcr4S09242.20 111 NCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	16	167	IPR003441	NAC domain
Pfam	PF02365	5.6E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MEESIVVNKG EHVIDLPPGF RFHPTDEEII THYLTEKVMN SSFSACAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYKGK NCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSYYN LPKAAKDEWV VCRVFHKSTG IKKTSIQELL 180 RGNSIGDDFL DYSSLPPLMD TPLHSNRPSS SFNGDEDNYD YKTIKISSFD GNYLPHLSTS 240 IINNNNNSNL QLQTQNPTYQ TLQNSIFHPQ ISASNNPIFT FQTNPNMSGY FQNSSFDGTN 300 QTLLRALAGQ GKECKTEQYS SNQSMATLSQ ETGLSTDVNT TTEISSVVSK QEIGSSKVYH 360 DDLDHQGPSS SVGPIADLEV LWDY

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MEESIVVNKG EHVIDLPPGF RFHPTDEEII THYLTEKVMN SSFSACAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYKGK NCLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEY RLEGKFSYYN LPKAAKDEWV VCRVFHKSTG IKKTSIQELL  180
RGNSIGDDFL DYSSLPPLMD TPLHSNRPSS SFNGDEDNYD YKTIKISSFD GNYLPHLSTS  240
IINNNNNSNL QLQTQNPTYQ TLQNSIFHPQ ISASNNPIFT FQTNPNMSGY FQNSSFDGTN  300
QTLLRALAGQ GKECKTEQYS SNQSMATLSQ ETGLSTDVNT TTEISSVVSK QEIGSSKVYH  360
DDLDHQGPSS SVGPIADLEV LWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	14	173	18	174	NAC domain-containing protein 19
3swm_B	2e-53	14	173	18	174	NAC domain-containing protein 19
3swm_C	2e-53	14	173	18	174	NAC domain-containing protein 19
3swm_D	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_A	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_B	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_C	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_D	2e-53	14	173	18	174	NAC domain-containing protein 19
4dul_A	2e-53	14	173	15	171	NAC domain-containing protein 19
4dul_B	2e-53	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775281	0.0	KC775281.1 Jatropha curcas NAC transcription factor 003 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092705.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FK44	1e-120	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	R4NFR5	0.0	R4NFR5_JATCU; NAC transcription factor 003
STRING	cassava4.1_029652m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-121	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Entrez Gene	105650416

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]