PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09294.20
Common NameJCGZ_07671, LOC105638149
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 229aa    MW: 25019.5 Da    PI: 10.2978
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09294.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-1989122134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Jcr4S09294.20  89 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 122
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-1983134IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-1383124No hitNo description
PROSITE profilePS5011412.96783119IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-1587122IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.72E-1388120No hitNo description
PROSITE patternPS00344089114IPR000679Zinc finger, GATA-type
PfamPF003205.1E-1789122IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MYRKANKLIS CKREDNIIGD YYDGNGGGGG EGSSSITKWL PSKVSLMQTM INSNCSSETD  60
KPVKFTLKFQ DQQCHAKSHN TNTTTIRVCS DCNTTTTPLW RSGPRGPKSL CNACGIRQRK  120
ARRAMAAAAM ANGTVAATET LSSSSSSSTK TNYKLQYNKD KKLRTAGHVT QGKKLSKPPD  180
PPHQTQRKLC LKNLALSLSN NSALQRIFPQ DVQEAAILLM ELSCGFIHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077288.11e-169putative GATA transcription factor 22 isoform X1
TrEMBLA0A067KP861e-167A0A067KP86_JATCU; Uncharacterized protein
STRINGcassava4.1_031585m1e-76(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-20GATA family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]