PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09368.50

Common Name

JCGZ_09528, LOC105635680

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 177aa MW: 19194.4 Da PI: 6.8922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09368.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F + L Hi H Jcr4S09368.50 56 YVCKECNKVFDDFRALGGHIAAH 78 9*********9999998888776 PP
2	zf-C2H2	10.8	0.0016	108	129	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y C+ C++sF++ L H Jcr4S09368.50 108 YACNLCSRSFTTGQALGGHKTY 129 89*********99888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.8E-5	56	78	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.554	56	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.07	56	78	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.58E-8	56	130	No hit	No description
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-9	108	132	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.806	108	130	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.95	108	130	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	110	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MIKRSKDLNR RNDVVLKEEG DMCSGFSDTD TANSEEDKRK KRKKLSELVG LKSSSYVCKE 60 CNKVFDDFRA LGGHIAAHNR NKRAAAAGDG VDSILAAEAG VFGEVKKYAC NLCSRSFTTG 120 QALGGHKTYH RKIGDCDGEV EDEAVSGSLA TSEEEKNAVF LALDLNAPPP YERPCGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	44	DKRKKRKKL
2	37	43	KRKKRKK
3	39	43	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074142.1	1e-128	zinc finger protein ZAT5
TrEMBL	A0A067KMV5	1e-127	A0A067KMV5_JATCU; Uncharacterized protein
STRING	cassava4.1_028217m	2e-31	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18825	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	9e-13	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105635680

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]