PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09419.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 124aa    MW: 14493.2 Da    PI: 10.1741
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09419.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000582042123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C +Cg + s ks+ ++H+  H
  Jcr4S09419.20 20 YFCDYCGICRSKKSLITSHMEIH 42
                   78******************995 PP
2zf-C2H223.61.3e-076990223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   +C+ Cg sF+ + +Lk+H+++H
  Jcr4S09419.20 69 TCEECGASFKKPTYLKQHMQSH 90
                   6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-91890No hitNo description
SMARTSM00355142042IPR015880Zinc finger, C2H2-like
SMARTSM003550.00326890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8036891IPR007087Zinc finger, C2H2
PfamPF000962.9E-56990IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-66991IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEESMENERP RPLSRDIRRY FCDYCGICRS KKSLITSHME IHHKIIGDRR RWRRKKIKMK  60
KLEGIKSNTC EECGASFKKP TYLKQHMQSH STVVGIMAVK LFSLLVLLCV DCTALAVDRL  120
FTVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14861RRRWRRKKIKMKKL
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066810.12e-43transcription factor IIIA
SwissprotQ84MZ44e-17TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2C9WI285e-35A0A2C9WI28_MANES; Uncharacterized protein
STRINGcassava4.1_010279m9e-36(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-17transcription factor IIIA