PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09723.10

Common Name

JCGZ_20854, LOC105628387

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 232aa MW: 26652.3 Da PI: 6.0477

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09723.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.2e-26	64	154	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAk++GF++r+++ ++s +n e++ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ gkw+vtk++ eHnH+l+ Jcr4S09723.10 64 DFYYDYAKQIGFTIRTNRIRHSLKNMEVIGRDFVCSREGFRAAKHALrKDRVLPPRPITREGCKAMIRLAARDGGKWVVTKFVREHNHKLM 154 6***************************************9998823333449********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-24	64	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
DGTLEVGEEC EDVEDGLLPN CNSHNVVNNT MILTEPSIEN LSANSLDLEP STGMTFPSLD 60 DARDFYYDYA KQIGFTIRTN RIRHSLKNME VIGRDFVCSR EGFRAAKHAL RKDRVLPPRP 120 ITREGCKAMI RLAARDGGKW VVTKFVREHN HKLMTHCKIP GELPTINILN EEEKDKKIKD 180 LYDELQHERQ RSAVIQQELH MILKDLQEHA DFMSTRVQDI INSLKEIELG NL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065171.1	1e-174	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067LHZ6	1e-172	A0A067LHZ6_JATCU; Uncharacterized protein
STRING	XP_002533358.1	1e-135	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15728	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-41	FAR1 family protein

Link Out ? help Back to Top
Entrez Gene	105628387

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]