PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09759.30

Common Name

JCGZ_10880, LOC105636189

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 205aa MW: 23189.2 Da PI: 7.3642

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09759.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+++ L H++ H Jcr4S09759.30 74 FVCKYCHKKFNNSQALGGHQNAH 96 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.4E-5	70	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.74E-7	70	102	No hit	No description
PROSITE profile	PS50157	11.635	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MKRNVEEEEE PIEEFNGQKA DPLLDLRLSS TNDVEVDSKL ELNLLGVLGN KESPKIPESE 60 TERNNNKEGG KRNFVCKYCH KKFNNSQALG GHQNAHKRER ALQKKEKGLD LLVPYGLVID 120 AHPSLYPYPS GHHGAFGRPL GIKMHSMIHK PPPYHYYDSY WANMEMNRSP PFLGRLIEGS 180 SLAAANRIGS QPYDLPGHYD LSLNL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074778.1	1e-150	zinc finger protein 3
TrEMBL	A0A067KV37	1e-149	A0A067KV37_JATCU; Uncharacterized protein
STRING	XP_002523665.1	7e-41	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-20	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105636189

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]