PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09910.10

Common Name

JCGZ_15996, LOC105630813

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 153aa MW: 17647.9 Da PI: 9.2375

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09910.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.8	2.8e-14	64	118	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NRe+ArrsR RKk +e+L+ v L +N++Lkk+l + +++ l Jcr4S09910.10 64 RKRRRMISNRESARRSRWRKKRHVENLTVQVNRLGIQNQELKKRLGSVLDHCHVL 118 5789*****************************************9999999766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.5E-12	60	115	No hit	No description
SMART	SM00338	3.3E-14	60	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.358	62	111	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-13	64	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.34E-12	64	118	No hit	No description
CDD	cd14702	2.18E-14	65	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MFLAQDSVQF DYPVLETGFT ASEIEELLSL LESPSSTSSP PSSTSSPNSG SEESNRVVYS 60 VDERKRRRMI SNRESARRSR WRKKRHVENL TVQVNRLGIQ NQELKKRLGS VLDHCHVLWR 120 ENNQLTTEYL ALQARLSDLC HTLVAMQTMQ RLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	67	RKRRR
2	65	84	RRRMISNRESARRSRWRKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068179.1	1e-109	basic leucine zipper 4
TrEMBL	A0A067LBW0	1e-108	A0A067LBW0_JATCU; Uncharacterized protein
STRING	cassava4.1_031242m	2e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	1e-21	basic leucine-zipper 4

Link Out ? help Back to Top
Entrez Gene	105630813

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]